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国家自然科学基金(30671624)

作品数:3 被引量:11H指数:2
相关作者:齐洁徐建鹏王志刚张全启王旭波更多>>
相关机构:中国海洋大学鲁东大学更多>>
发文基金:国家自然科学基金国家高技术研究发展计划更多>>
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石鲽野生群体和养殖群体遗传多样性的ISSR分析被引量:5
2009年
采用简单序列重复区间(ISSR)技术,对石鲽的3个野生群体——青岛群体(QD)、威海群体(WH)、莱州群体(LZ)和一个养殖群体(YZ)进行了遗传多样性研究。结果表明,从60个ISSR引物中筛选出8个ISSR引物对四个群体的基因组DNA进行扩增,共获得183个重复性好且5谱清晰的位点,4个群体的多态位点比例为48.1%-50.8%,Shannon多样性值为15.68-18.53,群体内个体间遗传相似度为0.905 3-0.918 9,群体间的遗传距离为0.005 5-0.017 3。同其他鱼类相比,石鲽群体的遗传多样性水平较低。用UPGMA方法构建的群体进化树显示,WH群体和LZ群体遗传距离最近,首先聚在一起,两者然后与YZ群体聚类,最后与QD群体相聚。利用基因分化系数进行遗传变异来源估算,结果表明石鲽群体96.47%的遗传变异来源于群体内,群体间的遗传变异仅占3.53%,不同群体间的遗传相似度较大。
徐建鹏张全启王志刚齐洁王旭波
关键词:石鲽ISSR
Analysis of New Microsatellite Markers Developed From Reported Sequences of Japanese Flounder Paralichthys olivaceus被引量:2
2010年
The expressed sequence tags(ESTs)of Japanese flounder,Paralichthys olivaeeus,were selected from GenBank to identify simple sequence repeats(SSRs)or microsatellites.A bioinformatic analysis of 11111 ESTs identified 751 SSR-containing ESTs,including 440 dinucleotide,254 trinucleotide,53 tetranueleotide,95 pentanucleotide and 40 hexanucleotide microsatellites respectively.The CA/TG and GA/TC repeats were the most abundant microsatellites.AT-rich types were predominant among trinucleotide and tetranucleotide microsatellites.PCR primers were designed to amplify 10 identified microsatellites loci.The PCR results from eight pairs of primers showed polymorphisms in wild populations.In 30 wild individuals,the mean observed and expected heterozygosities of these 8 polymorphic SSRs were 0.71 and 0.83 respectively and the average PIC value was 0.8.These microsatellite markers should prove to be a useful addition to the microsatellite markers that are now available for this species.
YU Haiyang JIANG Liming CHEN Wei WANG Xubo WANG Zhigang ZHANG Quanqi
关键词:BIOINFORMATICSMICROSATELLITE
Identification of differential genes in the ovary relative to the testis and their expression patterns in half-smooth tongue sole (Cynoglossus semilaevis)被引量:4
2010年
Half-smooth tongue sole (Cynoglossus semilaevis) is a rare marine flatfish whose mature ovary and testis greatly differ in volume and weight. The length and weight of mature females are over twice greater than those of mature males. To obtain sufficient information on gonad differentiation and the relationship between gonad development and growth in the fish, we compared gene expression between the ovary and testis using suppression subtractive hybridization (SSH). Testis cDNAs are subtracted from ovary cDNAs and are used to es- tablish an ovary testis-subtracted cDNA library. A total of 41 nonredundant clones are identified, including 20 known cDNAs, 9 unchar-acterized cDNAs (EST clones), and 12 novel sequences. For selected genes such as ZPC, RacGAP, survivin, aquaporin, CPEB, O5, O15, and O18, gene expression patterns are analyzed by reverse transcriptase-polymerase chain reaction (RT-PCR). The results confirm that these genes are only expressed in the ovary and not in the testis, or at higher levels in the ovary than in the testis. At the same time, expressions of certain genes such as ZPC, survivin, aquaporin, CPEB, and O15 are demonstrated to possess sexual dimorphism in the kidney or muscle, and spleen. The results suggest that these genes could play key roles not only in the ovary but in other female tissues as well.
Yeying SunQuanqi ZhangJie QiYanjie ChenQiwang ZhongChunmei Li
关键词:SSHRT-PCR
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