Scaffolds require individual external shape and well-defined internal structure, which is of great importance for tissue engineering. Rapid prototyping (RP) uses layer-manufacturing strategies to create physical objects and has the advantage on scaffold fabrication. A new RP technology called aerodynamically assisted tip-pen direct writing was developed to construct the complex architectures. Compared with the traditional nozzle, the new nozzle has a micro-tip in the center of the micro-hole. The flow is determined by the gap between the micro-hole and micro-tip, which makes it practical for more accurate flow control. A highly accurate three-dimensional (3-D) micro-positioning system was employed with the new nozzle to deposit maltose structures. 3-D architectures had been made by this method, the width of fiber in which is about 120 μm. The results show that this method provides a possibility to construct 3-D scaffolds with tissue-scale features (i.e., 10-100 μm) without bad influence on the biological activities.