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国家自然科学基金(31000350)

作品数:3 被引量:5H指数:1
相关作者:王玉光郑甲周洪波赵伟许尤厚更多>>
相关机构:中南大学更多>>
发文基金:国家自然科学基金国家重点基础研究发展计划更多>>
相关领域:轻工技术与工程生物学化学工程更多>>

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An optimized micro-plate assay for high-throughput screening of recombinant Pichia pastoris strains被引量:1
2012年
Abstract: A simple optimized microplate-based method to assay endo-1,4-β-mannosidase activity was described as an improved high-throughput screening method. A series of experimental conditions were optimized. It is revealed that the optimum measurement procedure is as follows: adding 50μL of diluted enzyme sample and 50 μL substrate, incubating at 45 ℃ for exactly 5 min in micro-plate, mixing with 100 μL 3,5-dinitrosalicylic acid (DNS) reagent, maintaining at boiling point for 15 rain, cooling down to room temperature before determining the ABS value at 540 nm using an ELISA micro-plate reader. The reaction volume of the optimized microplate-assay is reduced to 200μL from 2 500 μL used in the standard β-mannanase macro-assay. The optimized micro-assay is significantly more sensitive in all of the 643 candidates during endo-1,4-β-mannosidase screening. Statistical analyses show that the sensitivity of the optimized micro-method is significantly greater than that of the macro-assay. The optimized method is convenient, fast, and cheap for high throughput enzyme screening.
申丽王晓亮郑甲王筱陈青花胡祎玮赵伟
关键词:SCREENINGHIGH-THROUGHPUTMICROPLATE
A marked enhancement in production of amylase by Bacillus amyloliquefaciens in flask fermentation using statistical methods被引量:3
2011年
A total of 126 bacterial strains were isolated from soil samples. Among them, 11 isolates were found positive for amylase production. Strain YL produced the largest zone of clearance on plate assay. The isolate YL was identified as Bacillus sp. based on morphological and physiochemical characterization. According to 16S rRNA gene sequencing data, the closest phylogenetic neighbor of strain YL was Bacillus amyloliquefaciens (99.54%). After that, an optimization of culture conditions was carried out for the improvement of a-amylase production. Response surface methodology (RSM) was applied to evaluate the effect of medium components including wheat bran, cottonseed extract, yeast extract, starch, NaC1 and CaCl2. Three variables (wheat bran, cottonseed extract, and starch), which were identified to significantly affect amylase production by Plackett-Burman design were further optimized using response surface methodology of Box-Behnken design (BBD). The optimal concentrations estimated for each variable related to the maximum of amylase activity (86 kU/mL) were 10.80 g/L wheat bran, 9.90 g/L cottonseed extract, 0.5 g/L starch, 2.0 g/L yeast extract, 5.00 g/L NaCl and 2.00 g/L CaC12. The fermentation using optimized culture medium allowed a significant increase in amylase production (by 3-fold). The improvement in the a-amylase production after optimization process can be considered adequate for large-scale applications.
赵伟郑甲王玉光周洪波
关键词:AMYLASE
基于支持向量机的脂肪酶耐热序列与嗜热序列分类研究被引量:1
2011年
从GenBank数据库中获取了微生物来源的嗜热脂肪酶序列77条,耐热脂肪酶序列65条,分别统计分析序列中20种氨基酸出现的频次,二肽片段、三肽片段出现的差异以及非相邻二元组合的偏爱性。在此基础上,利用支持向量机(SVM)进行序列分类研究。研究结果表明:在统计学意义上,20种天然氨基酸残基中,亮氨酸、脯氨酸、蛋氨酸、苯丙氨酸、色氨酸和酪氨酸在嗜热蛋白序列中出现的频率高于其在耐热蛋白中出现的频率;二肽片段KC,EE,KE,RE,VE,YI,EK,VK,EV,YV,EY,KY,VY和YY的出现频率在嗜热蛋白中显著高于其在耐热蛋白中出现的频率。三肽片段的出现频率和非相邻二元组合的序列偏爱性也显示与蛋白耐热性显著相关。训练集的分类准确率达99.65%,真实数据集的分类准确率达到98.41%。
赵伟许尤厚郑甲王玉光周洪波
关键词:氨基酸组成蛋白质热稳定性支持向量机
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